J3_2UU9_018
3D structure
- PDB id
- 2UU9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUG-codon in the A-site and paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 2UU9|1|A|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UU9_018 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1005
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
2UU9|1|A|C|1116
2UU9|1|A|G|1117
2UU9|1|A|C|1118
*
2UU9|1|A|G|1155
2UU9|1|A|G|1156
2UU9|1|A|A|1157
2UU9|1|A|C|1158
2UU9|1|A|U|1159
2UU9|1|A|G|1160
2UU9|1|A|C|1161
*
2UU9|1|A|G|1175
2UU9|1|A|A|1176
2UU9|1|A|G|1177
2UU9|1|A|G|1178
2UU9|1|A|A|1179
2UU9|1|A|A|1180
2UU9|1|A|G|1181
2UU9|1|A|G|1182
2UU9|1|A|A|1183
2UU9|1|A|G|1184
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain B
- 30S RIBOSOMAL PROTEIN S2
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain N
- 30S RIBOSOMAL PROTEIN S14
Coloring options: