3D structure

PDB id
2UUC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a Valine-ASL with cmo5U in position 34 bound to an mRNA with a GUA-codon in the A-site and paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_2UUC_005 not in the Motif Atlas
Geometric match to J3_4LFB_005
Geometric discrepancy: 0.1363
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

2UUC|1|A|C|990
2UUC|1|A|U|991
2UUC|1|A|U|992
2UUC|1|A|G|993
*
2UUC|1|A|C|1045
2UUC|1|A|A|1046
2UUC|1|A|G|1047
*
2UUC|1|A|C|1210
2UUC|1|A|U|1211
2UUC|1|A|U|1212
2UUC|1|A|A|1213
2UUC|1|A|C|1214
2UUC|1|A|G|1215

Current chains

Chain A
16S RRNA

Nearby chains

Chain N
30S RIBOSOMAL PROTEIN S14

Coloring options:


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