J3_2UXB_009
3D structure
- PDB id
- 2UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 2UXB|1|A|U|1240, 2UXB|1|A|U|1302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UXB_009 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.0926
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
2UXB|1|A|C|1237
2UXB|1|A|A|1238
2UXB|1|A|A|1239
2UXB|1|A|U|1240
2UXB|1|A|G|1241
*
2UXB|1|A|C|1296
2UXB|1|A|C|1297
2UXB|1|A|C|1298
2UXB|1|A|A|1299
2UXB|1|A|G|1300
2UXB|1|A|U|1301
2UXB|1|A|U|1302
2UXB|1|A|C|1303
*
2UXB|1|A|G|1334
2UXB|1|A|C|1335
2UXB|1|A|C|1336
2UXB|1|A|G|1337
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain M
- RIBOSOMAL PROTEIN S13
- Chain U
- RIBOSOMAL PROTEIN THX
Coloring options: