J3_2UXB_021
3D structure
- PDB id
- 2UXB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA GGGU in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 2UXB|1|A|U|1212, 2UXB|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UXB_021 not in the Motif Atlas
- Homologous match to J3_6CZR_063
- Geometric discrepancy: 0.2544
- The information below is about J3_6CZR_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.1
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 3
Unit IDs
2UXB|1|A|C|990
2UXB|1|A|U|991
2UXB|1|A|U|992
2UXB|1|A|G|993
2UXB|1|A|A|994
2UXB|1|A|C|995
2UXB|1|A|A|996
2UXB|1|A|U|997
*
2UXB|1|A|A|1044
2UXB|1|A|C|1045
2UXB|1|A|A|1046
2UXB|1|A|G|1047
*
2UXB|1|A|C|1210
2UXB|1|A|U|1211
2UXB|1|A|U|1212
2UXB|1|A|A|1213
2UXB|1|A|C|1214
2UXB|1|A|G|1215
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain N
- RIBOSOMAL PROTEIN S14
Coloring options: