J3_2UXD_003
3D structure
- PDB id
- 2UXD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of an extended tRNA anticodon stem loop in complex with its cognate mRNA CGGG in the context of the Thermus thermophilus 30S subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2UXD_003 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0785
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
2UXD|1|A|U|943
2UXD|1|A|G|944
2UXD|1|A|G|945
2UXD|1|A|A|946
*
2UXD|1|A|U|1235
2UXD|1|A|A|1236
2UXD|1|A|C|1237
*
2UXD|1|A|G|1337
2UXD|1|A|G|1338
2UXD|1|A|A|1339
2UXD|1|A|A|1340
Current chains
- Chain A
- 16S RIBOSOMAL RNA
Nearby chains
- Chain G
- RIBOSOMAL PROTEIN S7
- Chain I
- RIBOSOMAL PROTEIN S9
- Chain M
- RIBOSOMAL PROTEIN S13
- Chain V
- RIBOSOMAL PROTEIN THX
Coloring options: