J3_2VQE_004
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 2VQE|1|A|A|975, 2VQE|1|A|G|976, 2VQE|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2VQE_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.048
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
2VQE|1|A|U|955
2VQE|1|A|U|956
2VQE|1|A|U|957
2VQE|1|A|A|958
2VQE|1|A|A|959
2VQE|1|A|U|960
2VQE|1|A|U|961
2VQE|1|A|C|962
*
2VQE|1|A|G|973
2VQE|1|A|A|974
2VQE|1|A|A|975
2VQE|1|A|G|976
2VQE|1|A|A|977
2VQE|1|A|A|978
2VQE|1|A|C|979
2VQE|1|A|C|980
2VQE|1|A|U|981
2VQE|1|A|U|982
2VQE|1|A|A|983
2VQE|1|A|C|984
*
2VQE|1|A|G|1221
2VQE|1|A|G|1222
2VQE|1|A|C|1223
2VQE|1|A|G|1224
2VQE|1|A|A|1225
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14 TYPE Z
- Chain S
- 30S RIBOSOMAL PROTEIN S19
Coloring options: