J3_2VQE_014
3D structure
- PDB id
- 2VQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 2VQE|1|A|C|48, 2VQE|1|A|A|50, 2VQE|1|A|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2VQE_014 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0459
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
2VQE|1|A|G|46
2VQE|1|A|C|47
2VQE|1|A|C|48
2VQE|1|A|U|49
2VQE|1|A|A|50
2VQE|1|A|A|51
2VQE|1|A|G|52
*
2VQE|1|A|U|359
2VQE|1|A|A|360
2VQE|1|A|G|361
2VQE|1|A|G|362
2VQE|1|A|A|363
2VQE|1|A|A|364
2VQE|1|A|U|365
2VQE|1|A|C|366
2VQE|1|A|U|367
*
2VQE|1|A|A|393
2VQE|1|A|G|394
2VQE|1|A|C|395
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain P
- 30S RIBOSOMAL PROTEIN S16
Coloring options: