J3_2VQF_014
3D structure
- PDB id
- 2VQF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decoding
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2VQF_014 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0431
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
2VQF|1|A|C|586
2VQF|1|A|G|587
2VQF|1|A|G|588
*
2VQF|1|A|C|651
2VQF|1|A|U|652
2VQF|1|A|A|653
2VQF|1|A|G|654
2VQF|1|A|A|655
*
2VQF|1|A|U|751
2VQF|1|A|G|752
2VQF|1|A|A|753
2VQF|1|A|C|754
2VQF|1|A|G|755
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain H
- 30S RIBOSOMAL PROTEIN S8
- Chain L
- 30S RIBOSOMAL PROTEIN S12
- Chain O
- 30S RIBOSOMAL PROTEIN S15
- Chain Q
- 30S RIBOSOMAL PROTEIN S17
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