J3_2YKR_004

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UGGAG*CUAC*GGAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|U|943
2YKR|1|A|G|944
2YKR|1|A|G|945
2YKR|1|A|A|946
2YKR|1|A|G|947
*
2YKR|1|A|C|1234
2YKR|1|A|U|1235
2YKR|1|A|A|1236
2YKR|1|A|C|1237
*
2YKR|1|A|G|1337
2YKR|1|A|G|1338
2YKR|1|A|A|1339
2YKR|1|A|A|1340

Current chains

Chain A

16S RRNA

Nearby chains

Chain G

30S RIBOSOMAL PROTEIN S7

Chain I

30S RIBOSOMAL PROTEIN S9

Chain M

30S RIBOSOMAL PROTEIN S13

Chain W

PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA