J3_2YKR_013

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

2YKR|1|A|U|1086

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|U|1073
2YKR|1|A|G|1074
*
2YKR|1|A|U|1083
2YKR|1|A|G|1084
2YKR|1|A|U|1085
2YKR|1|A|U|1086
2YKR|1|A|G|1087
*
2YKR|1|A|C|1098
2YKR|1|A|G|1099
2YKR|1|A|C|1100
2YKR|1|A|A|1101
2YKR|1|A|A|1102

Current chains

Chain A

16S RRNA

Nearby chains

Chain B

30S RIBOSOMAL PROTEIN S2

Chain E

30S RIBOSOMAL PROTEIN S5