J3_2YKR_014

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CGG*CUUGAG*CUGACG

Length

15 nucleotides

Bulged bases

2YKR|1|A|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|C|586
2YKR|1|A|G|587
2YKR|1|A|G|588
*
2YKR|1|A|C|651
2YKR|1|A|U|652
2YKR|1|A|U|653
2YKR|1|A|G|654
2YKR|1|A|A|655
2YKR|1|A|G|656
*
2YKR|1|A|C|750
2YKR|1|A|U|751
2YKR|1|A|G|752
2YKR|1|A|A|753
2YKR|1|A|C|754
2YKR|1|A|G|755

Current chains

Chain A

16S RRNA

Nearby chains

Chain H

30S RIBOSOMAL PROTEIN S8

Chain L

30S RIBOSOMAL PROTEIN S12

Chain O

30S RIBOSOMAL PROTEIN S15

Chain Q

30S RIBOSOMAL PROTEIN S17