J3_2YKR_015

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

GGUA*UACCGGUGG*CGGCC

Length

18 nucleotides

Bulged bases

2YKR|1|A|G|721, 2YKR|1|A|U|723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|G|670
2YKR|1|A|G|671
2YKR|1|A|U|672
2YKR|1|A|A|673
*
2YKR|1|A|U|717
2YKR|1|A|A|718
2YKR|1|A|C|719
2YKR|1|A|C|720
2YKR|1|A|G|721
2YKR|1|A|G|722
2YKR|1|A|U|723
2YKR|1|A|G|724
2YKR|1|A|G|725
*
2YKR|1|A|C|732
2YKR|1|A|G|733
2YKR|1|A|G|734
2YKR|1|A|C|735
2YKR|1|A|C|736

Current chains

Chain A

16S RRNA

Nearby chains

Chain F

30S RIBOSOMAL PROTEIN S6

Chain K

30S RIBOSOMAL PROTEIN S11

Chain O

30S RIBOSOMAL PROTEIN S15

Chain R

30S RIBOSOMAL PROTEIN S18

Chain U

30S RIBOSOMAL PROTEIN S21