J3_2YKR_018
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- UGGUUUAAUUC*GAAGAACCUUAC*GGCUACACA
- Length
- 32 nucleotides
- Bulged bases
- 2YKR|1|A|A|975, 2YKR|1|A|G|976
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
2YKR|1|A|U|952
2YKR|1|A|G|953
2YKR|1|A|G|954
2YKR|1|A|U|955
2YKR|1|A|U|956
2YKR|1|A|U|957
2YKR|1|A|A|958
2YKR|1|A|A|959
2YKR|1|A|U|960
2YKR|1|A|U|961
2YKR|1|A|C|962
*
2YKR|1|A|G|973
2YKR|1|A|A|974
2YKR|1|A|A|975
2YKR|1|A|G|976
2YKR|1|A|A|977
2YKR|1|A|A|978
2YKR|1|A|C|979
2YKR|1|A|C|980
2YKR|1|A|U|981
2YKR|1|A|U|982
2YKR|1|A|A|983
2YKR|1|A|C|984
*
2YKR|1|A|G|1221
2YKR|1|A|G|1222
2YKR|1|A|C|1223
2YKR|1|A|U|1224
2YKR|1|A|A|1225
2YKR|1|A|C|1226
2YKR|1|A|A|1227
2YKR|1|A|C|1228
2YKR|1|A|A|1229
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain I
- 30S RIBOSOMAL PROTEIN S9
- Chain J
- 30S RIBOSOMAL PROTEIN S10
- Chain M
- 30S RIBOSOMAL PROTEIN S13
- Chain N
- 30S RIBOSOMAL PROTEIN S14
- Chain S
- 30S RIBOSOMAL PROTEIN S19
- Chain W
- PUTATIVE RIBOSOME BIOGENESIS GTPASE RSGA
Coloring options: