J3_2YKR_019

3D structure

PDB id

2YKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit with RsgA bound in the presence of GMPPNP

Experimental method

ELECTRON MICROSCOPY

Resolution

9.8 Å

Loop

Sequence

CUUGACAUC*GACAG*CUUACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

2YKR|1|A|C|990
2YKR|1|A|U|991
2YKR|1|A|U|992
2YKR|1|A|G|993
2YKR|1|A|A|994
2YKR|1|A|C|995
2YKR|1|A|A|996
2YKR|1|A|U|997
2YKR|1|A|C|998
*
2YKR|1|A|G|1043
2YKR|1|A|A|1044
2YKR|1|A|C|1045
2YKR|1|A|A|1046
2YKR|1|A|G|1047
*
2YKR|1|A|C|1210
2YKR|1|A|U|1211
2YKR|1|A|U|1212
2YKR|1|A|A|1213
2YKR|1|A|C|1214
2YKR|1|A|G|1215

Current chains

Chain A

16S RRNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14