J3_2YKR_021
3D structure
- PDB id
- 2YKR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit with RsgA bound in the presence of GMPPNP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.8 Å
Loop
- Sequence
- CAAUG*CGUAGUCCGGAUU*AUGAAGUCG
- Length
- 27 nucleotides
- Bulged bases
- 2YKR|1|A|U|1240, 2YKR|1|A|C|1302
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
2YKR|1|A|C|1237
2YKR|1|A|A|1238
2YKR|1|A|A|1239
2YKR|1|A|U|1240
2YKR|1|A|G|1241
*
2YKR|1|A|C|1296
2YKR|1|A|G|1297
2YKR|1|A|U|1298
2YKR|1|A|A|1299
2YKR|1|A|G|1300
2YKR|1|A|U|1301
2YKR|1|A|C|1302
2YKR|1|A|C|1303
2YKR|1|A|G|1304
2YKR|1|A|G|1305
2YKR|1|A|A|1306
2YKR|1|A|U|1307
2YKR|1|A|U|1308
*
2YKR|1|A|A|1329
2YKR|1|A|U|1330
2YKR|1|A|G|1331
2YKR|1|A|A|1332
2YKR|1|A|A|1333
2YKR|1|A|G|1334
2YKR|1|A|U|1335
2YKR|1|A|C|1336
2YKR|1|A|G|1337
Current chains
- Chain A
- 16S RRNA
Nearby chains
- Chain G
- 30S RIBOSOMAL PROTEIN S7
- Chain M
- 30S RIBOSOMAL PROTEIN S13
Coloring options: