J3_2ZJP_001

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

2ZJP|1|X|G|699, 2ZJP|1|X|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJP_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1354

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

2ZJP|1|X|U|696
2ZJP|1|X|G|697
2ZJP|1|X|A|698
2ZJP|1|X|G|699
2ZJP|1|X|C|700
2ZJP|1|X|U|701
2ZJP|1|X|A|702
*
2ZJP|1|X|U|786
2ZJP|1|X|A|787
2ZJP|1|X|G|788
*
2ZJP|1|X|C|804
2ZJP|1|X|G|805
2ZJP|1|X|A|806
2ZJP|1|X|A|807

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain A

50S RIBOSOMAL PROTEIN L2