J3_2ZJP_010

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJP_010 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.1111

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

2ZJP|1|X|C|2769
2ZJP|1|X|A|2770
2ZJP|1|X|C|2771
*
2ZJP|1|X|G|2781
2ZJP|1|X|G|2782
2ZJP|1|X|U|2783
2ZJP|1|X|A|2784
2ZJP|1|X|A|2785
2ZJP|1|X|G|2786
*
2ZJP|1|X|C|2864
2ZJP|1|X|G|2865
2ZJP|1|X|A|2866
2ZJP|1|X|G|2867
2ZJP|1|X|G|2868

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain B

50S RIBOSOMAL PROTEIN L3

Chain P

50S RIBOSOMAL PROTEIN L22

Chain Y

50S RIBOSOMAL PROTEIN L32