J3_2ZJP_015

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

2ZJP|1|X|G|514, 2ZJP|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJP_015 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1749

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

2ZJP|1|X|G|30
2ZJP|1|X|C|31
*
2ZJP|1|X|G|485
2ZJP|1|X|U|486
2ZJP|1|X|G|487
2ZJP|1|X|A|488
2ZJP|1|X|A|489
2ZJP|1|X|A|490
2ZJP|1|X|A|491
2ZJP|1|X|G|492
2ZJP|1|X|A|493
2ZJP|1|X|A|494
2ZJP|1|X|C|495
*
2ZJP|1|X|G|506
2ZJP|1|X|A|507
2ZJP|1|X|G|508
2ZJP|1|X|U|509
2ZJP|1|X|G|510
2ZJP|1|X|A|511
2ZJP|1|X|A|512
2ZJP|1|X|A|513
2ZJP|1|X|G|514
2ZJP|1|X|A|515
2ZJP|1|X|G|516
2ZJP|1|X|A|517
2ZJP|1|X|A|518
2ZJP|1|X|C|519
2ZJP|1|X|C|520

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L22

Chain R

50S RIBOSOMAL PROTEIN L24