J3_9DFE_002
3D structure
- PDB id
- 9DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 9DFE|1|1A|U|504, 9DFE|1|1A|G|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DFE|1|1A|G|30
9DFE|1|1A|C|31
*
9DFE|1|1A|G|474
9DFE|1|1A|U|475
9DFE|1|1A|G|476
9DFE|1|1A|A|477
9DFE|1|1A|A|478
9DFE|1|1A|A|479
9DFE|1|1A|A|480
9DFE|1|1A|G|481
9DFE|1|1A|A|482
9DFE|1|1A|A|483
9DFE|1|1A|C|484
*
9DFE|1|1A|G|496
9DFE|1|1A|A|497
9DFE|1|1A|G|498
9DFE|1|1A|U|499
9DFE|1|1A|G|500
9DFE|1|1A|A|501
9DFE|1|1A|A|502
9DFE|1|1A|A|503
9DFE|1|1A|U|504
9DFE|1|1A|A|505
9DFE|1|1A|G|506
9DFE|1|1A|A|507
9DFE|1|1A|G|508
9DFE|1|1A|C|509
9DFE|1|1A|C|510
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: