J3_2ZJR_001

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

2ZJR|1|X|G|699, 2ZJR|1|X|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJR_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1311

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

2ZJR|1|X|U|696
2ZJR|1|X|G|697
2ZJR|1|X|A|698
2ZJR|1|X|G|699
2ZJR|1|X|C|700
2ZJR|1|X|U|701
2ZJR|1|X|A|702
*
2ZJR|1|X|U|786
2ZJR|1|X|A|787
2ZJR|1|X|G|788
*
2ZJR|1|X|C|804
2ZJR|1|X|G|805
2ZJR|1|X|A|806
2ZJR|1|X|A|807

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2