J3_2ZJR_002

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJR_002 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1286

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

2ZJR|1|X|C|711
2ZJR|1|X|A|712
2ZJR|1|X|G|713
*
2ZJR|1|X|C|745
2ZJR|1|X|G|746
2ZJR|1|X|A|747
2ZJR|1|X|A|748
2ZJR|1|X|C|749
*
2ZJR|1|X|G|773
2ZJR|1|X|A|774
2ZJR|1|X|U|775
2ZJR|1|X|G|776

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2