J3_2ZJR_004

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CGUAAG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJR_004 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.079

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

2ZJR|1|X|C|1311
2ZJR|1|X|G|1312
2ZJR|1|X|U|1313
2ZJR|1|X|A|1314
2ZJR|1|X|A|1315
2ZJR|1|X|G|1316
*
2ZJR|1|X|C|1641
2ZJR|1|X|G|1642
2ZJR|1|X|A|1643
*
2ZJR|1|X|U|1656
2ZJR|1|X|A|1657
2ZJR|1|X|A|1658
2ZJR|1|X|G|1659

Current chains

Chain X

ribosomal 23S RNA

Nearby chains