J3_2ZJR_014

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UCGGGAC*GACAG*CA

Length

14 nucleotides

Bulged bases

2ZJR|1|X|C|1358

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJR_014 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1768

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

2ZJR|1|X|U|1357
2ZJR|1|X|C|1358
2ZJR|1|X|G|1359
2ZJR|1|X|G|1360
2ZJR|1|X|G|1361
2ZJR|1|X|A|1362
2ZJR|1|X|C|1363
*
2ZJR|1|X|G|1394
2ZJR|1|X|A|1395
2ZJR|1|X|C|1396
2ZJR|1|X|A|1397
2ZJR|1|X|G|1398
*
2ZJR|1|X|C|1415
2ZJR|1|X|A|1416

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain Q

50S ribosomal protein L23