J3_2ZJR_016
3D structure
- PDB id
- 2ZJR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.91 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAGAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 2ZJR|1|X|G|514, 2ZJR|1|X|A|518
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_2ZJR_016 not in the Motif Atlas
- Homologous match to J3_7A0S_015
- Geometric discrepancy: 0.0814
- The information below is about J3_7A0S_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
2ZJR|1|X|G|30
2ZJR|1|X|C|31
*
2ZJR|1|X|G|485
2ZJR|1|X|U|486
2ZJR|1|X|G|487
2ZJR|1|X|A|488
2ZJR|1|X|A|489
2ZJR|1|X|A|490
2ZJR|1|X|A|491
2ZJR|1|X|G|492
2ZJR|1|X|A|493
2ZJR|1|X|A|494
2ZJR|1|X|C|495
*
2ZJR|1|X|G|506
2ZJR|1|X|A|507
2ZJR|1|X|G|508
2ZJR|1|X|U|509
2ZJR|1|X|G|510
2ZJR|1|X|A|511
2ZJR|1|X|A|512
2ZJR|1|X|A|513
2ZJR|1|X|G|514
2ZJR|1|X|A|515
2ZJR|1|X|G|516
2ZJR|1|X|A|517
2ZJR|1|X|A|518
2ZJR|1|X|C|519
2ZJR|1|X|C|520
Current chains
- Chain X
- ribosomal 23S RNA
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain R
- 50S ribosomal protein L24
Coloring options: