J3_2ZJR_018

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2ZJR_018 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.086

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2ZJR|1|X|G|1438
2ZJR|1|X|G|1439
2ZJR|1|X|G|1440
2ZJR|1|X|A|1441
2ZJR|1|X|C|1442
2ZJR|1|X|G|1443
*
2ZJR|1|X|C|1580
2ZJR|1|X|C|1581
*
2ZJR|1|X|G|1584
2ZJR|1|X|A|1585
2ZJR|1|X|A|1586
2ZJR|1|X|A|1587
2ZJR|1|X|A|1588
2ZJR|1|X|G|1589
2ZJR|1|X|C|1590

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2