J3_30QZ_008

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

30QZ|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_30QZ_008 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2051

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

30QZ|1|a|C|1298
30QZ|1|a|G|1299
30QZ|1|a|G|1300
30QZ|1|a|A|1301
30QZ|1|a|A|1302
30QZ|1|a|G|1303
*
30QZ|1|a|C|1625
30QZ|1|a|A|1626
30QZ|1|a|G|1627
*
30QZ|1|a|C|1639
30QZ|1|a|A|1640
30QZ|1|a|A|1641
30QZ|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains