J3_30RA_025

3D structure

PDB id

30RA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

30RA|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_30RA_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2028

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

30RA|1|a|C|1298
30RA|1|a|G|1299
30RA|1|a|G|1300
30RA|1|a|A|1301
30RA|1|a|A|1302
30RA|1|a|G|1303
*
30RA|1|a|C|1625
30RA|1|a|A|1626
30RA|1|a|G|1627
*
30RA|1|a|C|1639
30RA|1|a|A|1640
30RA|1|a|A|1641
30RA|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains