J3_30RB_023

3D structure

PDB id

30RB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_30RB_023 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.2018

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

30RB|1|a|C|1298
30RB|1|a|G|1299
30RB|1|a|G|1300
30RB|1|a|A|1301
30RB|1|a|A|1302
30RB|1|a|G|1303
*
30RB|1|a|C|1625
30RB|1|a|A|1626
30RB|1|a|G|1627
*
30RB|1|a|C|1639
30RB|1|a|A|1640
30RB|1|a|A|1641
30RB|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains