J3_359D_001

3D structure

PDB id

359D (explore in PDB, NAKB, or RNA 3D Hub)

Description

INHIBITION OF THE HAMMERHEAD RIBOZYME CLEAVAGE REACTION BY SITE-SPECIFIC BINDING OF TB(III)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCUGAUGAG*CGAAAC*GUCA

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39334.1

Basepair signature

cWW-cWW-F-F-cSS-cWW-F-cSW-F-tSH-F-cWW-F

Number of instances in this motif group

1

Unit IDs

359D|1|A|U|21
359D|1|A|C|30
359D|1|A|U|40
359D|1|A|G|50
359D|1|A|A|60
359D|1|A|U|70
359D|1|A|G|80
359D|1|A|A|90
359D|1|A|G|101
*
359D|1|B|C|111
359D|1|B|G|120
359D|1|B|A|130
359D|1|B|A|140
359D|1|B|A|151
359D|1|B|C|152
*
359D|1|B|G|162
359D|1|B|U|161
359D|1|B|C|170
359D|1|B|A|11

Current chains

Chain A

RNA HAMMERHEAD RIBOZYME

Chain B

RNA HAMMERHEAD RIBOZYME

Nearby chains