J3_3B0V_002
3D structure
- PDB id
- 3B0V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.51 Å
Loop
- Sequence
- GGUAGCUCAGUUGG(H2U)AGAGCAUG*CAGUGUCGGC*GCCCC
- Length
- 38 nucleotides
- Bulged bases
- 3B0V|1|B|U|16, 3B0V|1|B|U|17, 3B0V|1|B|G|18, 3B0V|1|B|G|19, 3B0V|1|B|H2U|20, 3B0V|1|B|U|47
- QA status
- Modified nucleotides: H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3B0V|1|B|G|6
3B0V|1|B|G|7
3B0V|1|B|U|8
3B0V|1|B|A|9
3B0V|1|B|G|10
3B0V|1|B|C|11
3B0V|1|B|U|12
3B0V|1|B|C|13
3B0V|1|B|A|14
3B0V|1|B|G|15
3B0V|1|B|U|16
3B0V|1|B|U|17
3B0V|1|B|G|18
3B0V|1|B|G|19
3B0V|1|B|H2U|20
3B0V|1|B|A|21
3B0V|1|B|G|22
3B0V|1|B|A|23
3B0V|1|B|G|24
3B0V|1|B|C|25
3B0V|1|B|A|26
3B0V|1|B|U|27
3B0V|1|B|G|28
*
3B0V|1|B|C|42
3B0V|1|B|A|43
3B0V|1|B|G|44
3B0V|1|B|U|45
3B0V|1|B|G|46
3B0V|1|B|U|47
3B0V|1|B|C|48
3B0V|1|B|G|49
3B0V|1|B|G|50
3B0V|1|B|C|51
*
3B0V|1|B|G|63
3B0V|1|B|C|64
3B0V|1|B|C|65
3B0V|1|B|C|66
3B0V|1|B|C|67
Current chains
- Chain B
- tRNA
Nearby chains
- Chain D
- tRNA-dihydrouridine synthase
Coloring options: