J3_3BBX_001
3D structure
- PDB id
- 3BBX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 10 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 3BBX|1|A|C|12, 3BBX|1|A|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3BBX_001 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.5973
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
3BBX|1|A|G|10
3BBX|1|A|C|11
3BBX|1|A|C|12
3BBX|1|A|G|13
3BBX|1|A|U|14
3BBX|1|A|A|15
3BBX|1|A|G|16
*
3BBX|1|A|C|68
3BBX|1|A|G|69
3BBX|1|A|C|70
*
3BBX|1|A|G|106
3BBX|1|A|G|107
3BBX|1|A|A|108
3BBX|1|A|A|109
3BBX|1|A|C|110
Current chains
- Chain A
- 5S ribosomal RNA
Nearby chains
- Chain O
- 50S ribosomal protein L18
- Chain V
- 50S ribosomal protein L25
- Chain W
- 50S ribosomal protein L27
Coloring options: