J3_3BBX_002

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

3BBX|1|B|U|686, 3BBX|1|B|A|792

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_002 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0756

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|U|683
3BBX|1|B|G|684
3BBX|1|B|A|685
3BBX|1|B|U|686
3BBX|1|B|C|687
3BBX|1|B|U|688
3BBX|1|B|A|689
*
3BBX|1|B|U|773
3BBX|1|B|G|774
3BBX|1|B|G|775
*
3BBX|1|B|C|791
3BBX|1|B|A|792
3BBX|1|B|A|793
3BBX|1|B|A|794

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2