J3_3BBX_006

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3BBX|1|B|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_006 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1624

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

3BBX|1|B|C|1306
3BBX|1|B|A|1307
3BBX|1|B|A|1308
3BBX|1|B|G|1309
*
3BBX|1|B|C|1605
3BBX|1|B|C|1606
3BBX|1|B|C|1607
3BBX|1|B|A|1608
3BBX|1|B|A|1609
3BBX|1|B|A|1610
3BBX|1|B|C|1611
*
3BBX|1|B|G|1620
3BBX|1|B|U|1621
3BBX|1|B|G|1622

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34