J3_3BBX_009

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

3BBX|1|B|A|2518, 3BBX|1|B|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_009 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0655

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

3BBX|1|B|C|2517
3BBX|1|B|A|2518
3BBX|1|B|U|2519
3BBX|1|B|C|2520
*
3BBX|1|B|G|2545
3BBX|1|B|U|2546
3BBX|1|B|A|2547
*
3BBX|1|B|U|2561
3BBX|1|B|U|2562
3BBX|1|B|U|2563
3BBX|1|B|A|2564
3BBX|1|B|A|2565
3BBX|1|B|A|2566
3BBX|1|B|G|2567

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain K

50S ribosomal protein L14