J3_3BBX_012

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

3BBX|1|B|U|72, 3BBX|1|B|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_012 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0703

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|A|56
3BBX|1|B|C|57
*
3BBX|1|B|G|70
3BBX|1|B|A|71
3BBX|1|B|U|72
3BBX|1|B|A|73
3BBX|1|B|A|74
3BBX|1|B|G|75
3BBX|1|B|C|76
*
3BBX|1|B|G|110
3BBX|1|B|A|111
3BBX|1|B|U|112
3BBX|1|B|U|113
3BBX|1|B|U|114

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23

Chain X

50S ribosomal protein L29