3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
UCGACCC*GGAAA*UA
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3BBX_016 not in the Motif Atlas
Homologous match to J3_5J7L_043
Geometric discrepancy: 0.5368
The information below is about J3_5J7L_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92705.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

3BBX|1|B|U|1344
3BBX|1|B|C|1345
3BBX|1|B|G|1346
3BBX|1|B|A|1347
3BBX|1|B|C|1348
3BBX|1|B|C|1349
3BBX|1|B|C|1350
*
3BBX|1|B|G|1381
3BBX|1|B|G|1382
3BBX|1|B|A|1383
3BBX|1|B|A|1384
3BBX|1|B|A|1385
*
3BBX|1|B|U|1402
3BBX|1|B|A|1403

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain T
50S ribosomal protein L23

Coloring options:


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