J3_3BBX_016

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3BBX_016 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.5368

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

3BBX|1|B|U|1344
3BBX|1|B|C|1345
3BBX|1|B|G|1346
3BBX|1|B|A|1347
3BBX|1|B|C|1348
3BBX|1|B|C|1349
3BBX|1|B|C|1350
*
3BBX|1|B|G|1381
3BBX|1|B|G|1382
3BBX|1|B|A|1383
3BBX|1|B|A|1384
3BBX|1|B|A|1385
*
3BBX|1|B|U|1402
3BBX|1|B|A|1403

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23