J3_3CC2_003

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

3CC2|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CC2_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0197

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3CC2|1|0|C|789
3CC2|1|0|A|790
3CC2|1|0|A|791
*
3CC2|1|0|U|823
3CC2|1|0|G|824
3CC2|1|0|U|825
3CC2|1|0|U|826
3CC2|1|0|A|827
3CC2|1|0|G|828
*
3CC2|1|0|C|853
3CC2|1|0|G|854
3CC2|1|0|U|855
3CC2|1|0|G|856

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae