3D structure

PDB id
3CC2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GCUG*CUCAC*GGACACC
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3CC2_007 not in the Motif Atlas
Homologous match to J3_4V9F_007
Geometric discrepancy: 0.0198
The information below is about J3_4V9F_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97609.1
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
Number of instances in this motif group
1

Unit IDs

3CC2|1|0|G|2131
3CC2|1|0|C|2132
3CC2|1|0|U|2133
3CC2|1|0|G|2134
*
3CC2|1|0|C|2241
3CC2|1|0|U|2242
3CC2|1|0|C|2243
3CC2|1|0|A|2244
3CC2|1|0|C|2245
*
3CC2|1|0|G|2256
3CC2|1|0|G|2257
3CC2|1|0|A|2258
3CC2|1|0|C|2259
3CC2|1|0|A|2260
3CC2|1|0|C|2261
3CC2|1|0|C|2262

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain A
50S ribosomal protein L2P
Chain M
50S ribosomal protein L15e

Coloring options:


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