J3_3CC2_007

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CC2_007 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0198

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97609.1

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-F-cWW-F

Number of instances in this motif group

1

Unit IDs

3CC2|1|0|G|2131
3CC2|1|0|C|2132
3CC2|1|0|U|2133
3CC2|1|0|G|2134
*
3CC2|1|0|C|2241
3CC2|1|0|U|2242
3CC2|1|0|C|2243
3CC2|1|0|A|2244
3CC2|1|0|C|2245
*
3CC2|1|0|G|2256
3CC2|1|0|G|2257
3CC2|1|0|A|2258
3CC2|1|0|C|2259
3CC2|1|0|A|2260
3CC2|1|0|C|2261
3CC2|1|0|C|2262

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain M

50S ribosomal protein L15e