J3_3CC2_016

3D structure

PDB id

3CC2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Refined Crystal Structure of the Haloarcula Marismortui Large Ribosomal Subunit at 2.4 Angstrom Resolution with rrnA Sequence for the 23S rRNA and Genome-derived Sequences for r-Proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA

Length

30 nucleotides

Bulged bases

3CC2|1|0|U|510, 3CC2|1|0|G|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CC2_016 not in the Motif Atlas

Homologous match to J3_4V9F_012

Geometric discrepancy: 0.0307

The information below is about J3_4V9F_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_24879.1

Basepair signature

cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3CC2|1|0|U|27
3CC2|1|0|G|28
*
3CC2|1|0|C|480
3CC2|1|0|U|481
3CC2|1|0|G|482
3CC2|1|0|C|483
3CC2|1|0|A|484
3CC2|1|0|A|485
3CC2|1|0|A|486
3CC2|1|0|G|487
3CC2|1|0|U|488
3CC2|1|0|A|489
3CC2|1|0|C|490
3CC2|1|0|C|491
*
3CC2|1|0|G|501
3CC2|1|0|A|502
3CC2|1|0|G|503
3CC2|1|0|G|504
3CC2|1|0|C|505
3CC2|1|0|G|506
3CC2|1|0|A|507
3CC2|1|0|A|508
3CC2|1|0|A|509
3CC2|1|0|U|510
3CC2|1|0|A|511
3CC2|1|0|G|512
3CC2|1|0|A|513
3CC2|1|0|G|514
3CC2|1|0|C|515
3CC2|1|0|A|516

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain C

50S ribosomal protein L4P

Chain R

50S ribosomal protein L22P

Chain T

50S ribosomal protein L24P