J3_3CCE_003

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

3CCE|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCE_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0402

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

3CCE|1|0|C|789
3CCE|1|0|A|790
3CCE|1|0|A|791
*
3CCE|1|0|U|823
3CCE|1|0|G|824
3CCE|1|0|U|825
3CCE|1|0|U|826
3CCE|1|0|A|827
3CCE|1|0|G|828
*
3CCE|1|0|C|853
3CCE|1|0|G|854
3CCE|1|0|U|855
3CCE|1|0|G|856

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19e

Chain Z

50S ribosomal protein L37Ae