J3_3CCE_014

3D structure

PDB id

3CCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation U2535A

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCE_014 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0743

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

3CCE|1|0|C|1450
3CCE|1|0|C|1451
3CCE|1|0|G|1452
3CCE|1|0|G|1453
3CCE|1|0|U|1454
3CCE|1|0|C|1455
*
3CCE|1|0|G|1490
3CCE|1|0|G|1491
3CCE|1|0|A|1492
3CCE|1|0|A|1493
3CCE|1|0|A|1494
*
3CCE|1|0|U|1511
3CCE|1|0|G|1512

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P