J3_3CCJ_018

3D structure

PDB id

3CCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation C2534U

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

3CCJ|1|0|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCJ_018 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.0674

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

3CCJ|1|0|A|302
3CCJ|1|0|C|303
3CCJ|1|0|G|304
3CCJ|1|0|A|305
3CCJ|1|0|A|306
3CCJ|1|0|G|307
*
3CCJ|1|0|C|323
3CCJ|1|0|G|324
3CCJ|1|0|U|325
3CCJ|1|0|G|326
3CCJ|1|0|A|327
3CCJ|1|0|U|328
3CCJ|1|0|A|329
3CCJ|1|0|C|330
3CCJ|1|0|A|331
3CCJ|1|0|G|332
*
3CCJ|1|0|C|344
3CCJ|1|0|G|345
3CCJ|1|0|U|346
3CCJ|1|0|A|347
3CCJ|1|0|C|348
3CCJ|1|0|U|349

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P