3D structure

PDB id
3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
GCUG*CUCAC*GGACACC
Length
16 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3CCQ_007 not in the Motif Atlas
Homologous match to J3_4V9F_007
Geometric discrepancy: 0.0503
The information below is about J3_4V9F_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_97609.1
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
Number of instances in this motif group
1

Unit IDs

3CCQ|1|0|G|2131
3CCQ|1|0|C|2132
3CCQ|1|0|U|2133
3CCQ|1|0|G|2134
*
3CCQ|1|0|C|2241
3CCQ|1|0|U|2242
3CCQ|1|0|C|2243
3CCQ|1|0|A|2244
3CCQ|1|0|C|2245
*
3CCQ|1|0|G|2256
3CCQ|1|0|G|2257
3CCQ|1|0|A|2258
3CCQ|1|0|C|2259
3CCQ|1|0|A|2260
3CCQ|1|0|C|2261
3CCQ|1|0|C|2262

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain A
50S ribosomal protein L2P
Chain M
50S ribosomal protein L15e

Coloring options:


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