J3_3CCQ_016
3D structure
- PDB id
- 3CCQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UG*CUGCAAAGUACC*GAGGCGAAAUAGAGCA
- Length
- 30 nucleotides
- Bulged bases
- 3CCQ|1|0|U|510, 3CCQ|1|0|G|514
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3CCQ_016 not in the Motif Atlas
- Homologous match to J3_4V9F_012
- Geometric discrepancy: 0.0482
- The information below is about J3_4V9F_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24879.1
- Basepair signature
- cWW-cWW-cWS-tSH-F-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3CCQ|1|0|U|27
3CCQ|1|0|G|28
*
3CCQ|1|0|C|480
3CCQ|1|0|U|481
3CCQ|1|0|G|482
3CCQ|1|0|C|483
3CCQ|1|0|A|484
3CCQ|1|0|A|485
3CCQ|1|0|A|486
3CCQ|1|0|G|487
3CCQ|1|0|U|488
3CCQ|1|0|A|489
3CCQ|1|0|C|490
3CCQ|1|0|C|491
*
3CCQ|1|0|G|501
3CCQ|1|0|A|502
3CCQ|1|0|G|503
3CCQ|1|0|G|504
3CCQ|1|0|C|505
3CCQ|1|0|G|506
3CCQ|1|0|A|507
3CCQ|1|0|A|508
3CCQ|1|0|A|509
3CCQ|1|0|U|510
3CCQ|1|0|A|511
3CCQ|1|0|G|512
3CCQ|1|0|A|513
3CCQ|1|0|G|514
3CCQ|1|0|C|515
3CCQ|1|0|A|516
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L39e
- Chain C
- 50S ribosomal protein L4P
- Chain R
- 50S ribosomal protein L22P
- Chain T
- 50S ribosomal protein L24P
Coloring options: