J3_3CCR_017

3D structure

PDB id

3CCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

3CCR|1|0|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CCR_017 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.051

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

3CCR|1|0|A|302
3CCR|1|0|C|303
3CCR|1|0|G|304
3CCR|1|0|A|305
3CCR|1|0|A|306
3CCR|1|0|G|307
*
3CCR|1|0|C|323
3CCR|1|0|G|324
3CCR|1|0|U|325
3CCR|1|0|G|326
3CCR|1|0|A|327
3CCR|1|0|U|328
3CCR|1|0|A|329
3CCR|1|0|C|330
3CCR|1|0|A|331
3CCR|1|0|G|332
*
3CCR|1|0|C|344
3CCR|1|0|G|345
3CCR|1|0|U|346
3CCR|1|0|A|347
3CCR|1|0|C|348
3CCR|1|0|U|349

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P