J3_3CD6_006

3D structure

PDB id

3CD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

3CD6|1|0|G|1683, 3CD6|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CD6_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0349

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CD6|1|0|U|1412
3CD6|1|0|A|1413
3CD6|1|0|A|1414
3CD6|1|0|G|1415
*
3CD6|1|0|C|1680
3CD6|1|0|G|1681
3CD6|1|0|A|1682
3CD6|1|0|G|1683
3CD6|1|0|A|1684
3CD6|1|0|A|1685
3CD6|1|0|C|1686
*
3CD6|1|0|G|1695
3CD6|1|0|U|1696
3CD6|1|0|G|1697

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e