J3_3CD6_017
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- ACGAAG*CGUGAUACAG*CGUACU
- Length
- 22 nucleotides
- Bulged bases
- 3CD6|1|0|U|328
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3CD6_017 not in the Motif Atlas
- Homologous match to J3_4V9F_015
- Geometric discrepancy: 0.0371
- The information below is about J3_4V9F_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_59706.1
- Basepair signature
- cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
3CD6|1|0|A|302
3CD6|1|0|C|303
3CD6|1|0|G|304
3CD6|1|0|A|305
3CD6|1|0|A|306
3CD6|1|0|G|307
*
3CD6|1|0|C|323
3CD6|1|0|G|324
3CD6|1|0|U|325
3CD6|1|0|G|326
3CD6|1|0|A|327
3CD6|1|0|U|328
3CD6|1|0|A|329
3CD6|1|0|C|330
3CD6|1|0|A|331
3CD6|1|0|G|332
*
3CD6|1|0|C|344
3CD6|1|0|G|345
3CD6|1|0|U|346
3CD6|1|0|A|347
3CD6|1|0|C|348
3CD6|1|0|U|349
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4P
- Chain T
- 50S ribosomal protein L24P
Coloring options: