J3_3CD6_020
3D structure
- PDB id
- 3CD6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.75 Å
Loop
- Sequence
- CC*GUCGAU*AACAG
- Length
- 13 nucleotides
- Bulged bases
- 3CD6|1|0|C|2850, 3CD6|1|0|A|2852
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3CD6_020 not in the Motif Atlas
- Homologous match to J3_4V9F_019
- Geometric discrepancy: 0.0988
- The information below is about J3_4V9F_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76911.2
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
3CD6|1|0|C|2831
3CD6|1|0|C|2832
*
3CD6|1|0|G|2848
3CD6|1|0|U|2849
3CD6|1|0|C|2850
3CD6|1|0|G|2851
3CD6|1|0|A|2852
3CD6|1|0|U|2853
*
3CD6|1|0|A|2905
3CD6|1|0|A|2906
3CD6|1|0|C|2907
3CD6|1|0|A|2908
3CD6|1|0|G|2909
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain R
- 50S ribosomal protein L22P
- Chain X
- 50S ribosomal protein L31e
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