J3_3CF5_001

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

3CF5|1|X|G|699, 3CF5|1|X|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CF5_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1346

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

3CF5|1|X|U|696
3CF5|1|X|G|697
3CF5|1|X|A|698
3CF5|1|X|G|699
3CF5|1|X|C|700
3CF5|1|X|U|701
3CF5|1|X|A|702
*
3CF5|1|X|U|786
3CF5|1|X|A|787
3CF5|1|X|G|788
*
3CF5|1|X|C|804
3CF5|1|X|G|805
3CF5|1|X|A|806
3CF5|1|X|A|807

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain A

50S RIBOSOMAL PROTEIN L2

Chain C

50S RIBOSOMAL PROTEIN L4