J3_3CF5_016

3D structure

PDB id

3CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

3CF5|1|X|G|514, 3CF5|1|X|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CF5_016 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1375

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

3CF5|1|X|G|30
3CF5|1|X|C|31
*
3CF5|1|X|G|485
3CF5|1|X|U|486
3CF5|1|X|G|487
3CF5|1|X|A|488
3CF5|1|X|A|489
3CF5|1|X|A|490
3CF5|1|X|A|491
3CF5|1|X|G|492
3CF5|1|X|A|493
3CF5|1|X|A|494
3CF5|1|X|C|495
*
3CF5|1|X|G|506
3CF5|1|X|A|507
3CF5|1|X|G|508
3CF5|1|X|U|509
3CF5|1|X|G|510
3CF5|1|X|A|511
3CF5|1|X|A|512
3CF5|1|X|A|513
3CF5|1|X|G|514
3CF5|1|X|A|515
3CF5|1|X|G|516
3CF5|1|X|A|517
3CF5|1|X|A|518
3CF5|1|X|C|519
3CF5|1|X|C|520

Current chains

Chain X

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain N

50S RIBOSOMAL PROTEIN L20

Chain P

50S RIBOSOMAL PROTEIN L22

Chain R

50S RIBOSOMAL PROTEIN L24